Index

_

__init__() (dosma.core.quant_vals.QuantitativeValue method) (dosma.core.quant_vals.T1Rho method) (dosma.core.quant_vals.T2 method) (dosma.core.quant_vals.T2Star method) (dosma.CurveFitter method) (dosma.defaults._Preferences method) (dosma.Device method) (dosma.DicomReader method) (dosma.DicomWriter method) (dosma.MedicalVolume method) (dosma.models.IWOAIOAIUnet2D method) (dosma.models.IWOAIOAIUnet2DNormalized method) (dosma.models.OAIUnet2D method) (dosma.MonoExponentialFit method) (dosma.NiftiReader method) (dosma.NiftiWriter method) (dosma.PolyFitter method) (dosma.scan_sequences.Cones method) (dosma.scan_sequences.CubeQuant method) (dosma.scan_sequences.Mapss method) (dosma.scan_sequences.QDess method) (dosma.scan_sequences.ScanSequence method) (dosma.tissues.FemoralCartilage method) (dosma.tissues.Meniscus method) (dosma.tissues.PatellarCartilage method) (dosma.tissues.TibialCartilage method)

_Preferences (class in dosma.defaults)

A

all_np() (in module dosma.core.numpy_routines) amax() (in module dosma.core.numpy_routines) amin() (in module dosma.core.numpy_routines) any_np() (in module dosma.core.numpy_routines)

apply_warp() (in module dosma) argmax() (in module dosma.core.numpy_routines) argmin() (in module dosma.core.numpy_routines) around() (in module dosma.core.numpy_routines)

B

biexponential() (in module dosma.core.fitting)

C

clip() (in module dosma.core.numpy_routines) collect_env_info() (in module dosma.utils.collect_env) concatenate() (in module dosma.core.numpy_routines)

Cones (class in dosma.scan_sequences) CubeQuant (class in dosma.scan_sequences) curve_fit() (in module dosma) CurveFitter (class in dosma)

D

debug() (in module dosma.utils.env) Device (class in dosma) DicomReader (class in dosma) DicomWriter (class in dosma) dosma.core.fitting module dosma.core.orientation module

dosma.core.registration module dosma.models module dosma.scan_sequences module dosma.tissues module

E

expand_dims() (in module dosma.core.numpy_routines)

F

FemoralCartilage (class in dosma.tissues)

G

get_device() (in module dosma) get_flip_inds() (in module dosma.core.orientation)

get_transpose_inds() (in module dosma.core.orientation) get_version() (in module dosma.utils.env)

I

IWOAIOAIUnet2D (class in dosma.models)

IWOAIOAIUnet2DNormalized (class in dosma.models)

M

Mapss (class in dosma.scan_sequences) may_share_memory() (in module dosma.core.numpy_routines) mean_np() (in module dosma.core.numpy_routines) MedicalVolume (class in dosma) Meniscus (class in dosma.tissues) module dosma.core.fitting dosma.core.orientation dosma.core.registration dosma.models dosma.scan_sequences dosma.tissues

monoexponential() (in module dosma.core.fitting) MonoExponentialFit (class in dosma)

N

nan_to_num() (in module dosma.core.numpy_routines) nanargmax() (in module dosma.core.numpy_routines) nanargmin() (in module dosma.core.numpy_routines) nanmax() (in module dosma.core.numpy_routines) nanmean() (in module dosma.core.numpy_routines)

nanmin() (in module dosma.core.numpy_routines) nanstd() (in module dosma.core.numpy_routines) nansum() (in module dosma.core.numpy_routines) NiftiReader (class in dosma) NiftiWriter (class in dosma)

O

OAIUnet2D (class in dosma.models) ones_like() (in module dosma.core.numpy_routines)

orientation_nib_to_standard() (in module dosma.core.orientation) orientation_standard_to_nib() (in module dosma.core.orientation)

P

package_available() (in module dosma.utils.env) PatellarCartilage (class in dosma.tissues)

polyfit() (in module dosma) PolyFitter (class in dosma) preferences (in module dosma)

Q

QDess (class in dosma.scan_sequences)

QuantitativeValue (class in dosma.core.quant_vals)

R

register() (in module dosma)

S

ScanSequence (class in dosma.scan_sequences) shares_memory() (in module dosma.core.numpy_routines) squeeze() (in module dosma.core.numpy_routines)

stack() (in module dosma.core.numpy_routines) std() (in module dosma.core.numpy_routines) sum_np() (in module dosma.core.numpy_routines) symlink_elastix() (in module dosma)

T

T1Rho (class in dosma.core.quant_vals) T2 (class in dosma.core.quant_vals) T2Star (class in dosma.core.quant_vals)

TibialCartilage (class in dosma.tissues) to_affine() (in module dosma.core.orientation) to_device() (in module dosma)

U

unlink_elastix() (in module dosma)

W

where() (in module dosma.core.numpy_routines)

Z

zeros_like() (in module dosma.core.numpy_routines)