dosma.tissues.PatellarCartilage

class dosma.tissues.PatellarCartilage(weights_dir: Optional[str] = None, medial_to_lateral: Optional[bool] = None)[source]

Handles analysis and visualization for patellar cartilage.

__init__(weights_dir: Optional[str] = None, medial_to_lateral: Optional[bool] = None)[source]

Methods

`__init__`([weights_dir, medial_to_lateral])
`add_quantitative_value`(qv_new)	Add quantitative value to the tissue.
`calc_quant_vals`()	Calculate quantitative values for pixels corresponding to the tissue.
`find_weights`(weights_dir)	Search for weights file in weights directory.
`get_mask`()	returns: Binary mask of segmented tissue.
`load_data`(load_dir_path)	Load data for tissue.
`save_data`(save_dirpath[, data_format])	Save data for tissue.
`save_quant_data`(dirpath)	Save quantitative data generated for this tissue.
`set_mask`(mask[, use_largest_cc])	Set mask for tissue.
`split_regions`(base_map)	Split patellar cartilage into deep/superficial regions.
`unroll_coronal`(quant_map)	Unroll patellar cartilage in the coronal direction.

Attributes